Basic Information
Locus ID:
CH07.1506
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 20827309 | 20838664 | - | CH07.1506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 201,927.45 Da | 43.16 | 82.46 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09279 | RNase_HI_like | 1344 | 1421 | 4.008E-27 | - |
| CDD | cd01647 | RT_LTR | 994 | 1151 | 2.99981E-65 | - |
| CDD | cd00303 | retropepsin_like | 737 | 821 | 2.22739E-7 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1208 | 1322 | 1.43678E-25 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 1348 | 1421 | 1.3E-11 | IPR002156 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1176 | 1274 | 8.8E-25 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1012 | 1152 | 2.6E-15 | IPR000477 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1555 | 1661 | 1.9E-17 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 954 | 1311 | 6.12E-94 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1343 | 1421 | 1.2E-13 | IPR012337 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 718 | 824 | 1.1E-10 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1345 | 1436 | 1.1E-17 | IPR036397 |
| Gene3D | G3DSA:3.10.20.370 | - | 1204 | 1275 | 3.1E-8 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1549 | 1604 | 3.1E-9 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1037 | 1153 | 7.7E-52 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 955 | 1099 | 7.7E-52 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1605 | 1697 | 8.0E-15 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1340 | 1520 | 9.943431 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 856 | - | - |
| Coils | Coil | Coil | 576 | 596 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 2.46E-255 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 | 4.07E-25 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |