Basic Information
Locus ID:
CH07.1408
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 17699618 | 17708255 | + | CH07.1408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 118,037.97 Da | 51.28 | 82.55 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 901 | 965 | 4.3E-14 | IPR025312 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 641 | 746 | 1.4E-34 | IPR025452 |
| Gene3D | G3DSA:3.30.1140.32 | - | 554 | 600 | 7.3E-6 | IPR036419 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 86 | 1.3E-8 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 184 | - | - |
| Coils | Coil | Coil | 65 | 85 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 4.98E-7 |
| RefSeq | XP_025882393.1 | uncharacterized protein LOC112939432 [Oryza sativa Japonica Group] | 7.88E-200 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 4.91E-6 | |
| TrEMBL | A0A679BBI7 | Putative Rim2 protein OS=Oryza rufipogon OX=4529 GN=ORUFIb0043P10.1-1 PE=4 SV=1 | 5.57E-201 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |