Basic Information
Locus ID:
CH07.136
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 1197927 | 1214085 | - | CH07.136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.95 | 34,819.60 Da | 35.51 | 96.94 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 138 | 323 | 2.8E-94 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 156 | 275 | 1.22E-25 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 137 | 323 | 2.2E-98 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 186 | 203 | - | IPR021132 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 323 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 1.59E-106 |
| RefSeq | NP_001131538.1 | 60S ribosomal protein L18-3 [Zea mays] | 5.3E-123 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 1.53E-105 | |
| TrEMBL | A0A3L6T8R6 | Ribosomal_L18e/L15P domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G16110 PE=3 SV=1 | 5.12E-123 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology