Basic Information
Locus ID:
CH07.1351
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Bulb-type mannose-specific lectin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 16049214 | 16092248 | - | CH07.1351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 92,133.46 Da | 43.28 | 89.99 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 229 | 310 | 7.72085E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 397 | 607 | 9.7E-39 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 3 | 75 | 5.6E-17 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 233 | 295 | 8.8E-15 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 107 | 212 | 7.8E-20 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 2 | 114 | 4.58E-14 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 372 | 596 | 8.75E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 466 | 649 | 2.1E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 360 | 465 | 4.8E-23 | - |
| SMART | SM00473 | ntp_6 | 234 | 309 | 4.4E-7 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 1 | 44 | 8.259161 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 233 | 310 | 9.701344 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 392 | 655 | 31.862995 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 7.56E-131 |
| RefSeq | XP_025799993.1 | receptor-like serine/threonine-protein kinase SD1-8 [Panicum hallii] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 7.33E-130 | |
| TrEMBL | A0A811Q6Q9 | ribonuclease P OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS34902 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||