Basic Information
Locus ID:
CH07.1301
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the chalcone isomerase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 15339719 | 15352798 | + | CH07.1301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 207,262.75 Da | 41.55 | 77.95 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1093 | 1177 | 2.82573E-7 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1335 | 1404 | 3.8E-15 | IPR041577 |
| SUPERFAMILY | SSF54626 | Chalcone isomerase | 1792 | 1881 | 1.96E-17 | IPR036298 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1269 | 1404 | 1.93E-30 | IPR043502 |
| SUPERFAMILY | SSF54626 | Chalcone isomerase | 115 | 217 | 3.14E-21 | IPR036298 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1575 | 1662 | 1.02E-10 | IPR012337 |
| Gene3D | G3DSA:3.30.70.270 | - | 1280 | 1363 | 1.2E-19 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1074 | 1180 | 1.9E-10 | IPR021109 |
| Gene3D | G3DSA:3.50.70.10 | - | 1792 | 1857 | 6.0E-20 | IPR016088 |
| Gene3D | G3DSA:1.10.890.20 | - | 1858 | 1873 | 6.0E-20 | IPR016089 |
| Gene3D | G3DSA:3.30.420.10 | - | 1595 | 1687 | 9.6E-15 | IPR036397 |
| Gene3D | G3DSA:3.50.70.10 | - | 109 | 271 | 6.5E-19 | IPR016088 |
| Gene3D | G3DSA:3.10.20.370 | - | 1364 | 1415 | 4.6E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 888 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1178 | 1212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 434 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53520.1 | Chalcone-flavanone isomerase family protein. | 7.57E-18 |
| RefSeq | XP_039818408.1 | protein NYNRIN-like [Panicum virgatum] | 1.61E-81 |
| Q9C8L2 | Fatty-acid-binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAP3 PE=1 SV=1 | 7.4E-17 | |
| TrEMBL | Q2QU35 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g17620 PE=4 SV=1 | 4.59E-178 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |