Basic Information
Locus ID:
CH07.1224
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 13457703 | 13463912 | - | CH07.1224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 82,331.45 Da | 45.07 | 71.52 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18718 | PIN_PRORP | 554 | 677 | 1.98641E-44 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 175 | 237 | 3.3E-16 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 311 | 455 | 1.2E-48 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 496 | 722 | 8.6E-71 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 514 | 688 | 1.6E-184 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 308 | 725 | 1.6E-184 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | 9.119859 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 292 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 1.74E-160 |
| RefSeq | XP_012698049.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Setaria italica] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 1.68E-159 | |
| TrEMBL | A0A2T7F4E3 | ribonuclease P OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G106900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology