Basic Information
Locus ID:
CH07.1111
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 11330812 | 11333592 | - | CH07.1111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 38,696.50 Da | 41.61 | 70.60 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 203 | 331 | 3.75019E-68 | - |
| CDD | cd16571 | RING-HC_SIAHs | 87 | 125 | 1.29572E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 131 | 330 | 2.3E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 142 | 334 | 2.68E-50 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 130 | 6.42E-7 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 198 | 330 | 1.1E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 131 | 2.5E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 197 | 7.8E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 125 | 9.523925 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 142 | 202 | 14.211109 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 1.29E-195 |
| RefSeq | XP_025814458.1 | E3 ubiquitin-protein ligase SINAT5-like [Panicum hallii] | 7.06E-245 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 4.71E-197 | |
| TrEMBL | A0A2T7F570 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G131100 PE=3 SV=1 | 1.6E-243 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology