Basic Information
Locus ID:
CH07.1102
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EMG1/NEP1 methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 11245664 | 11250004 | + | CH07.1102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 47,734.28 Da | 59.52 | 87.28 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18088 | Nep1-like | 94 | 271 | 8.86146E-94 | IPR005304 |
| Pfam | PF03587 | EMG1/NEP1 methyltransferase | 95 | 272 | 9.9E-64 | IPR005304 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 314 | 350 | 3.3E-6 | IPR013210 |
| SUPERFAMILY | SSF75217 | alpha/beta knot | 88 | 271 | 3.66E-62 | IPR029028 |
| Gene3D | G3DSA:3.40.1280.10 | - | 93 | 289 | 2.7E-77 | IPR029026 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 312 | 416 | 4.0E-5 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 66 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57000.1 | nucleolar essential protein-related. | 4.04E-82 |
| RefSeq | XP_039838364.1 | ribosomal RNA small subunit methyltransferase nep-1-like [Panicum virgatum] | 1.33E-134 |
| O35130 | Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1 | 2.66E-54 | |
| TrEMBL | A0A3L6QCR3 | Ribosomal RNA small subunit methyltransferase NEP1 OS=Panicum miliaceum OX=4540 GN=C2845_PM12G09900 PE=3 SV=1 | 1.26E-134 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology