Basic Information
Locus ID:
CH07.1044
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 10371057 | 10376107 | + | CH07.1044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 121,745.74 Da | 55.07 | 79.78 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 636 | 694 | 1.3E-8 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 791 | 933 | 1.3E-27 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 47 | 113 | 9.6E-8 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 217 | 323 | 9.3E-21 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 164 | 322 | 2.91E-25 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 733 | 933 | 4.98E-34 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 731 | 923 | 1.6E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 163 | 328 | 4.1E-23 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 38 | 142 | 2.4E-5 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 617 | 723 | 1.5E-6 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 791 | 806 | 9.3E-8 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 864 | 878 | 9.3E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 538 | - | - |
| Coils | Coil | Coil | 847 | 867 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14470.1 | NB-ARC domain-containing disease resistance protein. | 1.94E-26 |
| RefSeq | XP_034592117.1 | disease resistance protein RGA2-like [Setaria viridis] | 9.12E-184 |
| Q7XA40 | Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 | 4.12E-33 | |
| TrEMBL | A0A8T0XCN0 | NB-ARC domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG138000 PE=3 SV=1 | 2.95E-179 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700211 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.1044 |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.1HG0005640.1, HORVU.MOREX.r3.5HG0529550.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000489, gene-QYE76_047577 |
| Poaceae | Oryza coarctata | 5 | Oco04G008120, Oco14G016700, Oco23G006660, Oco24G006330 ... |
| Poaceae | Oryza sativa | 10 | LOC_Os02g18000.1, LOC_Os02g18070.1, LOC_Os02g18080.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G121500, gene-BS78_08G073100, gene-BS78_K161200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202529 |
| Poaceae | Thinopyrum elongatum | 22 | Tel1E01G609700, Tel2E01G100400, Tel2E01G1032200 ... |
| Poaceae | Triticum dicoccoides | 30 | gene_TRIDC1AG050140, gene_TRIDC1BG056960 ... |
| Poaceae | Triticum aestivum | 49 | TraesCS1B02G044100.1, TraesCS1B02G044200.3 ... |