Basic Information
Locus ID:
CH07.1006
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Arabinogalactan peptide
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 9785805 | 9792366 | - | CH07.1006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.71 | 33,139.84 Da | 73.78 | 74.47 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06376 | Arabinogalactan peptide | 271 | 302 | 2.0E-14 | IPR009424 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 126 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46330.1 | arabinogalactan protein 16. Encodes arabinogalactan protein (AGP16). | 8.69E-12 |
| RefSeq | XP_025791349.1 | arabinogalactan protein 16-like [Panicum hallii] | 1.23E-13 |
| O82337 | Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1 | 8.43E-11 | |
| TrEMBL | A0A3L6QCV7 | Arabinogalactan peptide 16-like OS=Panicum miliaceum OX=4540 GN=C2845_PM12G08950 PE=4 SV=1 | 2.78E-12 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology