Basic Information
Locus ID:
CH06.990
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 8530983 | 8533373 | - | CH06.990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 82,207.74 Da | 47.83 | 86.70 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 74 | 242 | 5.22842E-28 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 489 | 743 | 1.0E-36 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 105 | 208 | 1.67E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 489 | 744 | 2.26E-54 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 81 | 227 | 3.7E-9 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 468 | 754 | 1.4E-58 | - |
| SMART | SM00220 | serkin_6 | 482 | 751 | 9.9E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 482 | 752 | 31.961933 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 609 | 621 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 42 | - | - |
| Coils | Coil | Coil | 355 | 440 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 1.33E-85 |
| RefSeq | XP_012700813.1 | U-box domain-containing protein 33 [Setaria italica] | 3.56E-230 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 1.29E-84 | |
| TrEMBL | K3Y0Y6 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101758262 PE=4 SV=1 | 8.06E-229 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.3077, BH06.2876, CH06.990 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0551760, gene-QOZ80_6BG0505340 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr02G033750 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9501 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31192 |