Basic Information
Locus ID:
CH06.9
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 54168 | 56258 | + | CH06.9 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 64,341.28 Da | 39.50 | 98.86 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 224 | 266 | 2.24608E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 429 | 467 | 7.8E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 220 | 290 | 8.1E-24 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 510 | 549 | 3.9E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 347 | 385 | 8.1E-11 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 315 | 590 | 2.59E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 295 | 2.59E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 316 | 591 | 1.8E-55 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 293 | 2.5E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 469 | 509 | 79.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 428 | 468 | 0.011 | IPR000225 |
| SMART | SM00185 | arm_5 | 387 | 427 | 1.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 346 | 386 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 510 | 550 | 5.6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 223 | 286 | 1.6E-35 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 357 | 399 | 13.4574 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 219 | 293 | 45.778263 | IPR003613 |
| Coils | Coil | Coil | 576 | 596 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 6.01E-158 |
| RefSeq | XP_025811509.1 | U-box domain-containing protein 12 [Panicum hallii] | 5.13E-308 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 1.13E-259 | |
| TrEMBL | A0A2T7E463 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G370900 PE=4 SV=1 | 1.16E-306 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology