Basic Information
Locus ID:
CH06.878
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 7605974 | 7615800 | - | CH06.878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 277,857.63 Da | 40.44 | 78.90 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1362 | 1542 | 6.88665E-80 | - |
| CDD | cd00303 | retropepsin_like | 1076 | 1153 | 2.02133E-6 | - |
| CDD | cd02933 | OYE_like_FMN | 8 | 289 | 5.02533E-143 | - |
| CDD | cd09279 | RNase_HI_like | 1775 | 1899 | 1.59999E-44 | - |
| Pfam | PF00724 | NADH:flavin oxidoreductase / NADH oxidase family | 2383 | 2436 | 9.9E-7 | IPR001155 |
| Pfam | PF13456 | Reverse transcriptase-like | 1779 | 1898 | 2.3E-22 | IPR002156 |
| Pfam | PF00665 | Integrase core domain | 2098 | 2194 | 6.4E-12 | IPR001584 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1380 | 1542 | 4.7E-21 | IPR000477 |
| Pfam | PF00724 | NADH:flavin oxidoreductase / NADH oxidase family | 9 | 268 | 5.9E-74 | IPR001155 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1607 | 1704 | 8.1E-24 | IPR041577 |
| Pfam | PF17921 | Integrase zinc binding domain | 2027 | 2079 | 2.0E-8 | IPR041588 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2094 | 2252 | 3.04E-39 | IPR012337 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 2371 | 2462 | 7.73E-20 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1774 | 1896 | 1.64E-19 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1322 | 1743 | 1.78E-122 | IPR043502 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 8 | 272 | 4.58E-93 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 2356 | 2463 | 2.3E-25 | IPR013785 |
| Gene3D | G3DSA:3.30.70.270 | - | 1552 | 1635 | 2.2E-20 | IPR043128 |
| Gene3D | G3DSA:1.10.340.70 | - | 1989 | 2079 | 5.1E-13 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1057 | 1166 | 1.3E-10 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1776 | 1906 | 3.4E-28 | IPR036397 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 7 | 297 | 1.7E-107 | IPR013785 |
| Gene3D | G3DSA:3.30.70.270 | - | 1405 | 1542 | 3.3E-61 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 2088 | 2293 | 1.2E-50 | IPR036397 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1323 | 1467 | 3.3E-61 | - |
| Gene3D | G3DSA:3.10.20.370 | - | 1636 | 1706 | 1.1E-7 | - |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 2094 | 2254 | 22.706026 | IPR001584 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1360 | 1542 | 9.2241 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1771 | 1904 | 11.746551 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 999 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1932 | 1968 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 999 | - | - |
| Coils | Coil | Coil | 919 | 939 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76680.1 | 12-oxophytodienoate reductase 1. Encodes a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Shows activity towards 2,4,6-trinitrotoluene. Expressed predominately in root. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. Predicted to be a cytosolic protein. | 7.48E-128 |
| RefSeq | XP_050222931.1 | uncharacterized protein LOC126673022 [Mercurialis annua] | 0 |
| Q69TI0 | Putative 12-oxophytodienoate reductase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=OPR5 PE=2 SV=1 | 3.44E-160 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |