Basic Information
Locus ID:
CH06.832
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 7178627 | 7179634 | - | CH06.832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 35,987.93 Da | 73.17 | 61.52 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 200 | 242 | 5.69839E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 1.2E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 200 | 242 | 7.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 251 | 4.48E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 248 | 4.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 201 | 241 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 242 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 275 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 2.29E-45 |
| RefSeq | XP_039806708.1 | E3 ubiquitin-protein ligase RING1-like [Panicum virgatum] | 6.37E-165 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 1.33E-35 | |
| TrEMBL | A0A8T0T5R5 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_4NG121900 PE=4 SV=1 | 1.44E-163 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology