Basic Information
Locus ID:
CH06.8
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 42503 | 49573 | + | CH06.8 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 106,892.19 Da | 55.58 | 79.95 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 553 | 604 | 5.8E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 371 | 424 | 3.2E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 611 | 664 | 6.79E-12 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 865 | 954 | 6.16E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 701 | 762 | 8.64E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 605 | 696 | 4.5E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 703 | 766 | 3.9E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 705 | 762 | 0.0039 | IPR001965 |
| SMART | SM00249 | PHD_3 | 619 | 659 | 8.9E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 617 | 661 | 8.519899 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 703 | 764 | 8.626699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 706 | 761 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 620 | 658 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 1.95E-173 |
| RefSeq | XP_025811403.1 | uncharacterized protein LOC112889129 isoform X2 [Panicum hallii] | 0 |
| TrEMBL | A0A2S3HML6 | PHD-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G359800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology