Basic Information
Locus ID:
CH06.74
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PQQ enzyme repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 586938 | 598044 | - | CH06.74 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 126,365.78 Da | 40.57 | 91.23 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05930 | A_NRPS | 23 | 552 | 1.43019E-123 | - |
| Pfam | PF13360 | PQQ-like domain | 805 | 880 | 2.7E-6 | IPR002372 |
| Pfam | PF00501 | AMP-binding enzyme | 15 | 449 | 5.8E-58 | IPR000873 |
| Pfam | PF13360 | PQQ-like domain | 926 | 1049 | 4.5E-5 | IPR002372 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 780 | 1051 | 1.53E-33 | IPR011047 |
| SUPERFAMILY | SSF47336 | ACP-like | 570 | 634 | 4.32E-6 | IPR036736 |
| SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 6 | 558 | 2.09E-95 | - |
| Gene3D | G3DSA:3.40.50.12780 | - | 8 | 442 | 1.0E-77 | IPR042099 |
| Gene3D | G3DSA:1.10.1200.10 | - | 573 | 635 | 3.0E-7 | IPR036736 |
| Gene3D | G3DSA:2.40.10.480 | - | 968 | 1038 | 7.0E-8 | - |
| Gene3D | G3DSA:3.30.300.30 | - | 444 | 572 | 1.6E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 768 | 946 | 6.2E-28 | IPR015943 |
| SMART | SM00564 | ire1_9 | 1008 | 1040 | 0.17 | IPR018391 |
| SMART | SM00564 | ire1_9 | 965 | 997 | 160.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 837 | 870 | 0.16 | IPR018391 |
| SMART | SM00564 | ire1_9 | 921 | 956 | 230.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 794 | 828 | 330.0 | IPR018391 |
| ProSitePatterns | PS00012 | Phosphopantetheine attachment site. | 599 | 614 | - | IPR006162 |
| ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 192 | 203 | - | IPR020845 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35930.4 | - | 5.17E-224 |
| RefSeq | XP_004966593.1 | putative acyl-activating enzyme 19 [Setaria italica] | 0 |
| F4K1G2 | Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana OX=3702 GN=At5g35930 PE=2 SV=1 | 6.52E-217 | |
| TrEMBL | A0A368QRF8 | 4-coumarate--CoA ligase OS=Setaria italica OX=4555 GN=SETIT_4G009200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29781 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13565 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000361 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30738, Sbi_jg58523 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28396 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004962 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55005, Sgl60264 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051801 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024940, CQ.Regalona.r1.9BG0019990 |
| Apiaceae | Apium graveolens | 1 | Ag1G00359 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005370, COCNU_08G005380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696082 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.130.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G13832 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003545m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g017630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1511 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1544 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g00440 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.3863s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031236 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34057 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.77, BH06.81, CH06.74 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0458450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0639150.1 |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_017878, gene-QYE76_017879, gene-QYE76_017880 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G000650, Oco12G000540 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g02160.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G008800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400506, Pt_Chr0402369 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G014670, Chr14G000720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G069200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG067130, gene_TRIDC7AG003220 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3D02G491300.2, TraesCS7A02G011700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb378990_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51211 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31234 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1082, evm.TU.LG09.891 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1748, evm.TU.Scaffold_2_RagTag.1749 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3057, nbisL1-mrna-3114 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-335 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13941 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.250 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005393 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12781 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16420 |
| Salicaceae | Populus euphratica | 1 | populus_peu19246 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645145 |
| Solanaceae | Solanum chilense | 1 | SOLCI005586200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007647 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1573_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0906 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02570.v3.1 |