Basic Information
Locus ID:
CH06.693
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 5753456 | 5754505 | + | CH06.693 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 36,064.91 Da | 56.08 | 84.64 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 140 | 183 | 1.43778E-20 | - |
| Pfam | PF13639 | Ring finger domain | 140 | 183 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 189 | 7.54E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 188 | 7.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 182 | 9.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 349 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 5.19E-28 |
| RefSeq | XP_004964598.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 3.69E-159 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 5.07E-27 | |
| TrEMBL | A0A368QQL9 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_4G042500v2 PE=4 SV=1 | 8.34E-158 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology