Basic Information
Locus ID:
CH06.63
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 506282 | 510120 | - | CH06.63 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 27,869.21 Da | 22.99 | 71.17 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 14 | 82 | 7.02209E-31 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 74 | 1.7E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 9 | 107 | 2.17E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 9 | 81 | 3.6E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 13 | 82 | 2.8E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 12 | 86 | 10.002025 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 266 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 6.48E-84 |
| RefSeq | XP_004964319.1 | binding partner of ACD11 1 [Setaria italica] | 1.03E-157 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 8.43E-68 | |
| TrEMBL | A0A4U6UWY8 | RRM domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G007900v2 PE=4 SV=1 | 2.49E-156 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology