halophFGD

Basic Information

Locus ID: CH06.615

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: G-quadruplex DNA unwinding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH06	5007453	5013989	+	CH06.615

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.90	63,338.90 Da	60.23	74.03	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03478	Protein of unknown function (DUF295)	480	530	7.4E-13	IPR005174
SUPERFAMILY	SSF81383	F-box domain	246	291	5.63E-5	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	256	295	8.9E-6	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039807294.1	uncharacterized protein LOC120671118 [Panicum virgatum]	5.45E-150
TrEMBL	A0A8T0SYM3	DUF295 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG112917 PE=4 SV=1	1.23E-148

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g28550
Poaceae	Echinochloa crus-galli	18	AH01.1575, AH02.739, AH06.553, AH06.555, AH09.2525, BH06.600 ... BH01.3505, BH06.602, BH06.603, BH06.604, BH06.607, BH09.2757, CH05.188, CH06.613, CH06.615, CH06.619, CH06.621, CH09.2953
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0114370, gene-QOZ80_6AG0511200 ... gene-QOZ80_6BG0463290
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0043520.1.CDS1 ... HORVU.MOREX.r3.7HG0667180.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_001886
Poaceae	Oryza coarctata	2	Oco19G007770, Oco20G008080
Poaceae	Oryza sativa	3	LOC_Os05g05760.1, LOC_Os10g37450.1, LOC_Os10g37600.1
Poaceae	Paspalum vaginatum	4	gene-BS78_06G098400, gene-BS78_06G219600 ... gene-BS78_06G219700, gene-BS78_10G065600
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0300069, Pt_Chr0300424, Pt_Chr0300451, Pt_Chr0307103 ... Pt_Chr0701506, Pt_Chr0704583, Pt_Chr0704736
Poaceae	Sporobolus alterniflorus	1	Chr13G021640
Poaceae	Thinopyrum elongatum	4	Tel1E01G311900, Tel1E01G312200, Tel5E01G452900 ... Tel5E01G453000
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG026620, gene_TRIDC5BG046510
Poaceae	Triticum aestivum	11	TraesCS1A02G174100.1.cds1, TraesCS1B02G190200.1.cds1 ... TraesCS1B02G190300.1, TraesCS1D02G164700.1.cds1, TraesCS5B02G283000.1.cds1, TraesCS5B02G283200.1.cds1, TraesCS5B02G283700.1.cds1, TraesCS5D02G167100.1.cds1, TraesCS5D02G291900.1, TraesCS7A02G191600.1.cds1, TraesCS7D02G192600.1.cds1