Basic Information
Locus ID:
CH06.610
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 4956862 | 4969516 | + | CH06.610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 174,872.63 Da | 57.14 | 70.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 1253 | 1305 | 1.22175E-30 | - |
| CDD | cd07397 | MPP_NostocDevT-like | 58 | 297 | 9.23355E-126 | IPR027629 |
| CDD | cd08368 | LIM | 1280 | 1355 | 2.09943E-4 | - |
| Pfam | PF00412 | LIM domain | 1253 | 1308 | 1.3E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 1402 | 1610 | 1.6E-101 | IPR022087 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 59 | 268 | 2.1E-10 | IPR004843 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 1279 | 1334 | 1.62E-8 | - |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 58 | 274 | 2.43E-22 | IPR029052 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 1245 | 1278 | 1.25E-7 | - |
| Gene3D | G3DSA:3.60.21.10 | - | 52 | 307 | 1.8E-9 | IPR029052 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 1248 | 1327 | 6.1E-15 | - |
| SMART | SM00726 | uim | 1178 | 1197 | 0.33 | IPR003903 |
| SMART | SM00726 | uim | 1147 | 1166 | 0.13 | IPR003903 |
| SMART | SM00132 | lim_4 | 1252 | 1304 | 4.0E-11 | IPR001781 |
| TIGRFAM | TIGR04168 | TIGR04168: TIGR04168 family protein | 79 | 345 | 3.3E-75 | IPR027629 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 1251 | 1311 | 12.2068 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 1178 | 1197 | 9.681105 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 1147 | 1166 | 9.071364 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 1253 | 1287 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1541 | 1561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 516 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 3.12E-204 |
| RefSeq | XP_039805873.1 | protein DA1-related 1-like [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 2.99E-203 | |
| TrEMBL | A0A3L6PHK8 | Metallophos domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM10G04540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31566, jg33586, jg40982, jg40983 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8909 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192450 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25418 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg19332, Seu_jg7396, Seu_jg7399, Seu_jg7400 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011116 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02567, Sgl07722, Sgl41833, Sgl46633 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006496, gene:ENSEOMG00000022508 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.5AG0017320, CQ.Regalona.r1.5AG0017330 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30223200, pistato.v30266090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00444 |
| Arecaceae | Cocos nucifera | 1 | contig69463550G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724251 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.772.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G12752 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58200.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014084m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g037740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2665 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0107s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25170 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.245 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000925 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00408 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.548, BH06.595, CH06.610 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511210, gene-QOZ80_6BG0463230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0658760.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G003800, Oco12G003790 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G065000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405237, Pt_Chr0405260 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G002820, Chr21G002000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G297300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG017820, gene_TRIDC7BG007200 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G048800.1, TraesCS7D02G147800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb374780_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5004 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1087, evm.TU.LG20.784 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g18390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.145 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13933 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13179, nbisL1-mrna-21266 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16580, nbisL1-mrna-4954 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.91 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16678, nbisL1-mrna-1890 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14536 |
| Salicaceae | Populus euphratica | 3 | populus_peu05628, populus_peu12261, populus_peu12269 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603023, gene-LOC132603029 |
| Solanaceae | Solanum chilense | 1 | SOLCI002277500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024172 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8137 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1113 |