Basic Information
Locus ID:
CH06.582
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 4713077 | 4717300 | + | CH06.582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 81,850.63 Da | 39.55 | 93.48 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 408 | 675 | 3.58849E-52 | IPR001932 |
| Pfam | PF00069 | Protein kinase domain | 28 | 305 | 3.7E-51 | IPR000719 |
| Pfam | PF00481 | Protein phosphatase 2C | 428 | 680 | 3.9E-37 | IPR001932 |
| SUPERFAMILY | SSF81606 | PP2C-like | 411 | 676 | 1.19E-47 | IPR036457 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 307 | 2.08E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 100 | 5.4E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 121 | 332 | 3.3E-54 | - |
| Gene3D | G3DSA:3.60.40.10 | - | 401 | 700 | 4.2E-72 | IPR036457 |
| SMART | SM00220 | serkin_6 | 27 | 314 | 4.4E-34 | IPR000719 |
| SMART | SM00332 | PP2C_4 | 399 | 687 | 2.1E-61 | IPR001932 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 407 | 733 | 36.470367 | IPR001932 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 310 | 36.922966 | IPR000719 |
| ProSitePatterns | PS01032 | PPM-type phosphatase domain signature. | 434 | 442 | - | IPR000222 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 164 | 176 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 33 | 56 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17090.1 | Protein phosphatase 2C family protein. | 5.33E-109 |
| RefSeq | XP_039842681.1 | calcium/calmodulin-dependent protein kinase type II subunit delta-like isoform X1 [Panicum virgatum] | 0 |
| Q7Y138 | Probable protein phosphatase 2C 36 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0832400 PE=2 SV=1 | 4.49E-127 | |
| TrEMBL | A0A8T0TLS5 | protein-serine/threonine phosphatase OS=Panicum virgatum OX=38727 GN=PVAP13_4KG071000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.516, BH06.568, CH06.582 |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G094100.1 |