Basic Information
Locus ID:
CH06.54
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 412433 | 415979 | + | CH06.54 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 78,443.96 Da | 52.71 | 98.38 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 176 | 296 | 6.1E-19 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 18 | 96 | 9.6E-12 | IPR041118 |
| SUPERFAMILY | SSF52058 | L domain-like | 396 | 582 | 1.12E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 155 | 295 | 3.91E-22 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 330 | 612 | 1.6E-11 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 134 | 301 | 7.3E-23 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 17 | 124 | 6.0E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 182 | 197 | 3.8E-9 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 254 | 268 | 3.8E-9 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 570 | 586 | 3.8E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 665 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45200.3 | - | 1.4E-6 |
| RefSeq | XP_025827285.1 | uncharacterized protein LOC112902428 isoform X2 [Panicum hallii] | 1.05E-207 |
| Q2R8L1 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 | 1.44E-82 | |
| TrEMBL | A0A1E5VST8 | protein-serine/threonine phosphatase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0010810 PE=3 SV=1 | 3.27E-214 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology