Basic Information
Locus ID:
CH06.342
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 2779250 | 2782794 | - | CH06.342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 28,218.52 Da | 59.55 | 66.33 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 155 | 226 | 5.2E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 147 | 226 | 1.75E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 147 | 239 | 3.2E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 154 | 231 | 5.1E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 239 | 12.372725 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 4.25E-27 |
| RefSeq | XP_004964565.1 | RNA-binding protein 1 isoform X4 [Setaria italica] | 3.48E-132 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 6.21E-29 | |
| TrEMBL | K3XYX4 | RRM domain-containing protein OS=Setaria italica OX=4555 GN=101774592 PE=4 SV=1 | 7.88E-131 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology