Basic Information
Locus ID:
CH06.2931
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 35734876 | 35736081 | + | CH06.2931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 41,378.16 Da | 69.92 | 68.95 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 123 | 166 | 2.44227E-17 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 171 | 4.54E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 173 | 9.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 242 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 3.76E-74 |
| RefSeq | XP_034589250.1 | RING-H2 finger protein ATL43-like [Setaria viridis] | 1.08E-233 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 3.64E-73 | |
| TrEMBL | A0A4U6V7F6 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G259101v2 PE=4 SV=1 | 2.45E-232 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology