Basic Information
Locus ID:
CH06.2904
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 35533082 | 35534729 | - | CH06.2904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 45,064.07 Da | 63.93 | 87.77 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 25 | 61 | 5.4E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 183 | 276 | 1.53E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 79 | 8.11E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 74 | 1.2E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 59 | 9.603447 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80960.5 | - | 2.64E-6 |
| RefSeq | XP_025791941.1 | uncharacterized protein LOC112873137 [Panicum hallii] | 2.63E-193 |
| TrEMBL | A0A2T7C9B7 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G383000 PE=4 SV=1 | 1.8E-193 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH06.2904 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0549130, gene-QOZ80_6BG0502690 |
| Poaceae | Oryza coarctata | 1 | Oco11G015790 |
| Poaceae | Oryza sativa | 5 | LOC_Os06g02054.1, LOC_Os06g43740.1, LOC_Os06g47400.1 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_10G237500, gene-BS78_10G237800, gene-BS78_K227900 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G001780, Chr11G001800, Chr11G001820 |