Basic Information
Locus ID:
CH06.2690
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 33711206 | 33722494 | - | CH06.2690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 49,218.06 Da | 51.63 | 98.63 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 72 | 5.52053E-34 | IPR033896 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 396 | 435 | 6.5E-9 | IPR018957 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.2E-24 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 160 | 1.8E-17 | IPR002487 |
| SUPERFAMILY | SSF57850 | RING/U-box | 395 | 439 | 3.12E-14 | - |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 81 | 3.79E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 88 | 4.1E-23 | IPR036879 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 373 | 439 | 4.6E-14 | IPR013083 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 5.0E-36 | IPR002100 |
| SMART | SM00184 | ring_2 | 396 | 435 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 184 | 13.506875 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.1089 | IPR002100 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 396 | 436 | 12.267982 | IPR001841 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.3E-26 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.3E-26 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.3E-26 | IPR002100 |
| Coils | Coil | Coil | 88 | 115 | - | - |
| Coils | Coil | Coil | 119 | 150 | - | - |
| Coils | Coil | Coil | 352 | 372 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69120.2 | - | 4.65E-33 |
| RefSeq | XP_034591618.1 | MADS-box transcription factor 30-like [Setaria viridis] | 1.48E-81 |
| Q655V4 | MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS30 PE=2 SV=1 | 4.38E-49 | |
| TrEMBL | A0A4U6V6W5 | MADS-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G280700v2 PE=4 SV=1 | 1.11E-80 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.2609, BH06.2403, CH06.2690 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G221100, gene-BS78_10G221400 |
| Poaceae | Zea mays | 1 | Zm00001eb274330_P001 |