Basic Information
Locus ID:
CH06.2641
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 33305998 | 33309479 | + | CH06.2641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 38,494.96 Da | 37.16 | 86.26 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 67 | 360 | 1.64328E-166 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 70 | 332 | 9.4E-118 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 332 | 359 | 1.83E-5 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 68 | 331 | 3.34E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 97 | 361 | 5.7E-100 | IPR027417 |
| SMART | SM00382 | AAA_5 | 119 | 290 | 2.1E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 67 | 359 | 3.9E-133 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 98 | 256 | 28.17351 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 261 | 336 | 28.13595 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 275 | 283 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 189 | 218 | 4.6E-68 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 307 | 336 | 4.6E-68 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 227 | 256 | 4.6E-68 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 272 | 300 | 4.6E-68 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 155 | 184 | 4.6E-68 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 8.07E-196 |
| RefSeq | XP_004982347.1 | DNA repair protein recA homolog 1, chloroplastic [Setaria italica] | 8.29E-243 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 7.74E-195 | |
| TrEMBL | A0A835B1W9 | DNA repair protein recA homolog 1, chloroplastic OS=Digitaria exilis OX=1010633 GN=HU200_044173 PE=3 SV=1 | 4.61E-242 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology