Basic Information
Locus ID:
CH06.2588
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 32839540 | 32840082 | + | CH06.2588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 19,386.36 Da | 48.00 | 76.61 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 7 | 143 | 3.68633E-47 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 129 | 176 | 1.4E-27 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 7 | 65 | 8.7E-25 | IPR016073 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 66 | 2.45E-20 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 103 | 176 | 1.23E-28 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 4 | 178 | 3.9E-64 | IPR011333 |
| SMART | SM00512 | skp1_3 | 5 | 128 | 1.5E-35 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 179 | 1.1E-60 | IPR016897 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 103 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 7.1E-56 |
| RefSeq | XP_025812695.1 | SKP1-like protein 1A [Panicum hallii] | 2.18E-74 |
| Q6PL11 | SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1 | 4.74E-58 | |
| TrEMBL | A0A835E2W5 | SKP1-like protein OS=Digitaria exilis OX=1010633 GN=HU200_059113 PE=3 SV=1 | 3.79E-74 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH06.2588.