Basic Information
Locus ID:
CH06.2586
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 32835552 | 32836121 | + | CH06.2586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 20,043.13 Da | 38.57 | 74.55 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 17 | 154 | 1.98682E-36 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 141 | 187 | 2.5E-26 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 17 | 83 | 4.4E-15 | IPR016073 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 113 | 187 | 2.62E-27 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 86 | 7.85E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 189 | 5.9E-56 | IPR011333 |
| SMART | SM00512 | skp1_3 | 15 | 139 | 5.4E-22 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 189 | 7.5E-56 | IPR016897 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 105 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 7.53E-40 |
| RefSeq | XP_034589450.1 | SKP1-like protein 1 [Setaria viridis] | 1.23E-59 |
| Q6PL11 | SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1 | 5.23E-42 | |
| TrEMBL | A0A4U6UZ15 | SKP1-like protein OS=Setaria viridis OX=4556 GN=SEVIR_4G155600v2 PE=3 SV=1 | 2.78E-58 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||