Basic Information
Locus ID:
CH06.2531
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 32316275 | 32322596 | - | CH06.2531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 114,105.77 Da | 57.48 | 66.64 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 118 | 424 | 1.12949E-160 | - |
| Pfam | PF01753 | MYND finger | 22 | 59 | 2.0E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 119 | 423 | 1.3E-42 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 20 | 62 | 5.76E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 118 | 425 | 5.69E-86 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 12 | 65 | 9.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 117 | 432 | 1.5E-91 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 22 | 59 | 12.39774 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 119 | 426 | 49.64497 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 120 | 135 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1008 | 1037 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 7.8E-183 |
| RefSeq | XP_025811279.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Panicum hallii] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 7.51E-182 | |
| TrEMBL | A0A2S3HHI2 | MYND-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G060800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology