Basic Information
Locus ID:
CH06.2262
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 29428920 | 29430930 | + | CH06.2262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 65,969.62 Da | 43.10 | 100.46 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 201 | 223 | 0.12 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 82 | 1.57E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 326 | 571 | 2.55E-35 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 162 | 349 | 3.92E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 240 | 4.7E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 241 | 432 | 1.4E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 433 | 628 | 1.2E-32 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 174 | 199 | 0.21 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 544 | 568 | 8.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 357 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 384 | 409 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 200 | 225 | 9.3E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 145 | 173 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 518 | 543 | 0.013 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 463 | 4.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 464 | 489 | 0.023 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 226 | 251 | 2.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 252 | 277 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 491 | 516 | 5.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 570 | 595 | 300.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 1.78E-91 |
| RefSeq | XP_004965933.1 | EIN3-binding F-box protein 1 [Setaria italica] | 3.65E-271 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 1.73E-90 | |
| TrEMBL | A0A835EGX0 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_042634 PE=4 SV=1 | 6.14E-292 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology