Basic Information
Locus ID:
CH06.2207
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 28778398 | 28779393 | + | CH06.2207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 34,394.47 Da | 53.12 | 73.59 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 118 | 163 | 1.1E-10 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 80 | 115 | 7.3E-5 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 33 | 301 | 1.06E-36 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 26 | 324 | 7.8E-35 | IPR015915 |
| SMART | SM00612 | kelc_smart | 130 | 177 | 2.8E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 80 | 128 | 6.2E-6 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 1.01E-54 |
| RefSeq | XP_012700569.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At1g80440-like [Setaria italica] | 7.92E-196 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 9.76E-54 | |
| TrEMBL | A0A4U6V0M0 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G238100v2 PE=4 SV=1 | 2.96E-193 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology