Basic Information
Locus ID:
CH06.2124
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 27733448 | 27736587 | + | CH06.2124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 43,496.87 Da | 38.99 | 90.74 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 181 | 369 | 1.94E-9 | IPR029044 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 135 | 376 | 1.3E-6 | IPR029044 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45320.1 | 1.68E-153 | |
| RefSeq | XP_012704281.1 | uncharacterized protein LOC101777016 [Setaria italica] | 3.26E-273 |
| TrEMBL | A0A4U6SUX8 | Nucleotid_trans domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G174100v2 PE=4 SV=1 | 1.05E-271 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29239, jg622 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11630 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005002 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072780 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg16549, Sbi_jg18010, Sbi_jg32279, Sbi_jg4924 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1219, Seu_jg12858, Seu_jg27403 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23840, Sgl29004 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009535, gene:ENSEOMG00000028959 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001590, CQ.Regalona.r1.4BG0001690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30282290 |
| Apiaceae | Apium graveolens | 5 | Ag10G02089, Ag6G00119, AgUnG00662, AgUnG01262, AgUnG01271 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G015290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702047 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2330.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G20632 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g029600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0535 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12650 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1583 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014915 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08429 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2082, BH06.1925, CH06.2124 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543400, gene-QOZ80_6BG0496650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0716800.1 |
| Poaceae | Oryza coarctata | 1 | Oco11G011500 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g37430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G172500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400535, Pt_Chr0601868 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029260, Chr05G006910, Chr10G016730, Chr11G005630 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG050630, gene_TRIDC7BG043290 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G362700.2, TraesCS7B02G266100.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb012290_P001, Zm00001eb084960_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10178, nbis-gene-41160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30726, Zma_g32968 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1723, evm.TU.LG22.653 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.169 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19550, nbisL1-mrna-9104 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3952 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22259 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.101 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8065 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9729 |
| Salicaceae | Populus euphratica | 2 | populus_peu25556, populus_peu27856 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609452 |
| Solanaceae | Solanum chilense | 1 | SOLCI001249300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027134 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25257_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2660 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04120.v3.1 |