Basic Information
Locus ID:
CH06.2084
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 27232620 | 27234826 | - | CH06.2084 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 45,599.00 Da | 48.77 | 95.94 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 23 | 69 | 6.7E-12 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 107 | 265 | 4.51E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 70 | 1.27E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 69 | 3.9E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 281 | 1.1E-15 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 68 | 10.530751 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05490.1 | RNI-like superfamily protein. | 6.57E-20 |
| RefSeq | XP_039853258.1 | putative F-box/LRR-repeat protein 9 isoform X1 [Panicum virgatum] | 1.78E-146 |
| Q9M0U6 | Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1 | 6.44E-19 | |
| TrEMBL | A0A8T0R8V3 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG044500 PE=4 SV=1 | 4.03E-145 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH08.560, AH08.563, BH08.599, BH08.609, BH08.611, CH06.2084 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0620410, gene-QOZ80_8BG0648220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G076300, gene-BS78_07G093000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G010490 |
| Poaceae | Zea mays | 2 | Zm00001eb386430_P003, Zm00001eb386440_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23738 |