halophFGD

Basic Information

Locus ID: CH06.2037

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Modified RING finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH06	26642640	26645929	+	CH06.2037

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.99	46,864.98 Da	56.65	74.29	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04564	U-box domain	394	429	1.6E-7	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	394	431	2.71E-6	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	381	433	1.0E-5	IPR013083

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K09561 (STIP1 homology and U-box containing protein 1 [EC:2.3.2.27])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G07370.1	carboxyl terminus of HSC70-interacting protein. Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment.	3.33E-9
RefSeq	XP_044966916.1	E3 ubiquitin-protein ligase CHIP-like [Hordeum vulgare subsp. vulgare]	2.59E-16
Swiss-Prot	Q9SRS9	E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana OX=3702 GN=CHIP PE=1 SV=1	3.29E-8
TrEMBL	Q0DLF3	RING-type E3 ubiquitin transferase (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0104900 PE=4 SV=1	2.78E-16

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for CH06.2037.