Basic Information
Locus ID:
CH06.2031
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 26536101 | 26542192 | + | CH06.2031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 78,184.16 Da | 56.68 | 85.90 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 432 | 713 | 1.96E-11 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 330 | 720 | 7.1E-23 | IPR036259 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 664 | 687 | 1.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 331 | 347 | 1.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 445 | 467 | 1.6E-5 | IPR001958 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 4.06E-84 |
| RefSeq | XP_002465000.1 | hippocampus abundant transcript 1 protein [Sorghum bicolor] | 8.81E-171 |
| P02982 | Tetracycline resistance protein, class A OS=Escherichia coli OX=562 GN=tetA PE=3 SV=2 | 1.83E-7 | |
| TrEMBL | A0A811MGC0 | MFS domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2363 PE=4 SV=1 | 1.44E-171 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology