Basic Information
Locus ID:
CH06.2004
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SWIM zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 26156627 | 26157391 | + | CH06.2004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 27,559.35 Da | 65.17 | 75.91 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 163 | 212 | 5.7E-7 | IPR001841 |
| Pfam | PF04434 | SWIM zinc finger | 61 | 89 | 6.4E-5 | IPR007527 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 218 | 4.95E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 244 | 1.9E-8 | IPR013083 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 61 | 91 | 10.37311 | IPR007527 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 212 | 9.877997 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11620.1 | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related. | 4.98E-54 |
| RefSeq | XP_004965594.3 | mitogen-activated protein kinase kinase kinase 1 [Setaria italica] | 3.35E-147 |
| TrEMBL | K3XYS3 | SWIM-type domain-containing protein OS=Setaria italica OX=4555 GN=101760404 PE=4 SV=1 | 1.05E-145 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36709 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13222 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000302, Ah000305, Ah034994 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g032410, BVRB_5g120090 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12887, Sbi_jg31604, Sbi_jg52982, Sbi_jg57666 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25341, Seu_jg8874 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018191, GOSA_00025841 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54276, Sgl59615, Sgl62263, Sgl66811 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000018509 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0015480, CQ.Regalona.r1.2BG0017510 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253840 |
| Apiaceae | Apium graveolens | 1 | Ag7G01874 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000770, COCNU_03G014340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710286, gene-LOC103710977 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G18422, Ftri2G13153 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014372m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g050380.2N, BniB05g025940.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02680 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0548s00003.v1.0, Dusal.0681s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.817 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013615 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1984, BH06.1822, CH06.2004 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0542690, gene-QOZ80_6BG0495890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0718460.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034403 |
| Poaceae | Oryza coarctata | 2 | Oco11G010950, Oco12G011060 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g36030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G163300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400321 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G016250, Chr11G006150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G628300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG049680, gene_TRIDC7BG044160 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G355600.1.cds1, TraesCS7B02G272100.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb277580_P001, Zm00001eb384710_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10242, nbis-gene-41214, nbis-gene-58738 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30689, Zma_g32930 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.699, evm.TU.LG15.237, evm.TU.LG19.742 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g06870 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.765, evm.TU.Scaffold_4_RagTag.1172 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13726, nbisL1-mrna-27378 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20666, nbisL1-mrna-2832 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1285 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.169 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18271, nbisL1-mrna-20628 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1018, nbisL1-mrna-7961 |
| Salicaceae | Populus euphratica | 1 | populus_peu12741 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599423 |
| Solanaceae | Solanum chilense | 2 | SOLCI003705000, SOLCI006489900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004179, gene-LOC107028065 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3132 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1760 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02490.v3.1 |