Basic Information
Locus ID:
CH06.1948
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Amino acid permease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 25303712 | 25305478 | + | CH06.1948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 61,663.77 Da | 36.79 | 100.03 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13520 | Amino acid permease | 70 | 468 | 3.8E-41 | IPR002293 |
| Pfam | PF13906 | C-terminus of AA_permease | 511 | 560 | 5.9E-16 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 66 | 492 | 1.1E-82 | - |
| PIRSF | PIRSF006060 | AA_transporter | 47 | 578 | 3.7E-66 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17120.1 | cationic amino acid transporter 8. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. | 1.12E-236 |
| RefSeq | XP_034589451.1 | cationic amino acid transporter 8, vacuolar-like [Setaria viridis] | 0 |
| Q9SHH0 | Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana OX=3702 GN=CAT8 PE=2 SV=1 | 1.08E-235 | |
| TrEMBL | A0A4U6V1W1 | AA_permease_C domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G142600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology