Basic Information
Locus ID:
CH06.1932
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 25114668 | 25125505 | + | CH06.1932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.24 | 156,119.30 Da | 59.32 | 81.11 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 1230 | 1273 | 2.3289E-17 | - |
| Pfam | PF13855 | Leucine rich repeat | 898 | 956 | 2.7E-6 | IPR001611 |
| Pfam | PF13639 | Ring finger domain | 1229 | 1273 | 6.1E-12 | IPR001841 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 844 | 880 | 1.8E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 842 | 1034 | 5.35E-29 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1211 | 1278 | 2.2E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 842 | 1040 | 1.2E-36 | IPR032675 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1209 | 1280 | 5.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 1231 | 1272 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1231 | 1273 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1394 | 1453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1322 | 1378 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 5.23E-16 |
| RefSeq | XP_025813023.1 | RING-H2 finger protein ATL52-like [Panicum hallii] | 1.36E-76 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 5.1E-15 | |
| TrEMBL | A0A835A4R4 | LRRNT_2 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_064928 PE=4 SV=1 | 6.54E-77 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||