Basic Information
Locus ID:
CH06.1931
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 25102762 | 25103538 | + | CH06.1931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 27,241.77 Da | 45.80 | 85.97 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 193 | 237 | 3.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 243 | 1.71E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 242 | 1.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 195 | 236 | 4.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 195 | 237 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 100 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11360.1 | RING-H2 finger A1B. Encodes a putative RING-H2 finger protein RHA1b. | 8.8E-10 |
| RefSeq | XP_039807082.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum virgatum] | 3.93E-154 |
| Q5Z5F2 | E3 ubiquitin-protein ligase Os06g0535400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535400 PE=2 SV=1 | 3.87E-114 | |
| TrEMBL | A0A8T0TA63 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG168900 PE=4 SV=1 | 8.89E-153 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.1888, BH06.1729, CH06.1931 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541930, gene-QOZ80_6BG0495120 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709350.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034092, gene-QYE76_034093 |
| Poaceae | Oryza coarctata | 2 | Oco11G010400, Oco12G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G155100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0400154, Pt_Chr0400168, Pt_Chr0400169, Pt_Chr0400176 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G006150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG048530, gene_TRIDC7BG032550 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G347800.1.cds1, TraesCS7B02G235400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10295, nbis-gene-19345 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30652, Zma_g32889 |