Basic Information
Locus ID:
CH06.1925
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 25055097 | 25055765 | + | CH06.1925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 22,719.93 Da | 60.71 | 109.64 | 0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 148 | 190 | 8.88722E-17 | - |
| Pfam | PF13639 | Ring finger domain | 148 | 190 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 196 | 7.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 196 | 2.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 189 | 7.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 11.913911 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 3.65E-14 |
| RefSeq | XP_039805014.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum virgatum] | 3.54E-86 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 3.58E-13 | |
| TrEMBL | A0A2T7DXW8 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G124500 PE=4 SV=1 | 3.55E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology