Basic Information
Locus ID:
CH06.1924
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 25051272 | 25052261 | + | CH06.1924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 34,438.89 Da | 83.72 | 77.99 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 121 | 164 | 2.19979E-18 | - |
| Pfam | PF13639 | Ring finger domain | 121 | 164 | 2.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 167 | 1.57E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 170 | 9.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 122 | 163 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 164 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 329 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 3.34E-15 |
| RefSeq | XP_039807545.1 | E3 ubiquitin-protein ligase ATL41-like [Panicum virgatum] | 6.44E-162 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 1.41E-14 | |
| TrEMBL | A0A2T7DXW7 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G124700 PE=4 SV=1 | 3.45E-156 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1881, CH06.1924 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0495060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709270.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_019878, gene-QYE76_019879, gene-QYE76_033977 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G010330, Oco12G010450 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400172, Pt_Chr0400181 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028430, Chr05G006120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048570, gene_TRIDC7BG038760 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G348200.1.cds1, TraesCS7B02G234500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10297 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30648, Zma_g32887 |