Basic Information
Locus ID:
CH06.1786
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 22307521 | 22317912 | + | CH06.1786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 141,013.77 Da | 70.31 | 60.66 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 955 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 910 | 928 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1045 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 803 | 824 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 120 | - | - |
| Coils | Coil | Coil | 913 | 933 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13615.1 | Uncharacterised protein family SERF. | 1.02E-7 |
| RefSeq | XP_039780686.1 | uncharacterized protein LOC120647957 [Panicum virgatum] | 5.97E-82 |
| TrEMBL | A0A3L6RI10 | CCHC-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G17720 PE=4 SV=1 | 1.92E-90 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |