Basic Information
Locus ID:
CH06.1760
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 21880365 | 21883371 | - | CH06.1760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 25,420.74 Da | 42.89 | 68.08 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 19 | 225 | 1.6E-73 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 107 | 215 | 2.8E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 109 | 228 | 1.4E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 114 | 216 | 24.537094 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 85 | - | - |
| Coils | Coil | Coil | 73 | 93 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 1.67E-65 |
| RefSeq | XP_004965463.1 | auxin-responsive protein IAA21 [Setaria italica] | 2.96E-147 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 2.97E-113 | |
| TrEMBL | K3XZ51 | Auxin-responsive protein OS=Setaria italica OX=4555 GN=101773098 PE=3 SV=1 | 6.7E-146 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology