Basic Information
Locus ID:
CH06.154
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 1295518 | 1299411 | + | CH06.154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 43,788.50 Da | 41.70 | 89.67 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 195 | 226 | 3.9E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 14 | 75 | 3.0E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 178 | 3.7E-17 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 293 | 353 | 2.94E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 248 | 4.68E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 369 | 7.0E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 112 | 252 | 1.3E-29 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 111 | 2.3E-24 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.23 | IPR002110 |
| SMART | SM00248 | ANK_2a | 150 | 179 | 2.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 194 | 223 | 7.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 140 | 1.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 3.3E-6 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.534378 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 9.05686 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.5057 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 150 | 182 | 11.674439 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.54937 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.601871 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 194 | 226 | 12.075089 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 299 | 348 | 9.656702 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 194 | 220 | 11.346704 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 150 | 181 | 10.709951 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 314 | 323 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 210 | 224 | 5.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 151 | 166 | 5.1E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 424 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 1.85E-103 |
| RefSeq | XP_039806234.1 | probable E3 ubiquitin-protein ligase XBOS36 [Panicum virgatum] | 1.82E-226 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 8.02E-161 | |
| TrEMBL | A0A8T0SWH8 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG019200 PE=4 SV=1 | 4.11E-225 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology