Basic Information
Locus ID:
CH06.1494
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosomal protein L31e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 15212146 | 15227090 | + | CH06.1494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 285,717.00 Da | 56.68 | 69.50 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00463 | Ribosomal_L31e | 2443 | 2503 | 4.01117E-25 | IPR000054 |
| Pfam | PF01198 | Ribosomal protein L31e | 2445 | 2526 | 1.0E-39 | IPR000054 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 462 | 515 | 4.5E-8 | IPR025312 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 217 | 315 | 1.1E-33 | IPR025452 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1845 | 1968 | 6.21E-6 | IPR038765 |
| SUPERFAMILY | SSF54575 | Ribosomal protein L31e | 2445 | 2526 | 5.36E-30 | IPR023621 |
| Gene3D | G3DSA:3.10.440.10 | - | 2443 | 2554 | 1.6E-44 | IPR023621 |
| SMART | SM01380 | Ribosomal_L31e_2 | 2444 | 2527 | 1.8E-47 | IPR000054 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1734 | 1762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2344 | 2384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1043 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2419 | 2444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1655 | 1680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 942 | 972 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2111 | 2142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2358 | 2384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1449 | 1470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2428 | 2444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1598 | 1680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 1001 | - | - |
| Coils | Coil | Coil | 1398 | 1432 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19740.1 | Ribosomal protein L31e family protein. | 3.84E-55 |
| RefSeq | XP_025882393.1 | uncharacterized protein LOC112939432 [Oryza sativa Japonica Group] | 2.16E-259 |
| P46290 | Large ribosomal subunit protein eL31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1 | 2.23E-57 | |
| TrEMBL | Q6AV59 | Putative transposase family tnp2 OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0101N11.2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |