Basic Information
Locus ID:
CH06.143
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 1097736 | 1100418 | + | CH06.143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 27,782.67 Da | 47.55 | 49.19 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 157 | 239 | 2.09707E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 229 | 3.5E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 136 | 256 | 3.22E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 153 | 244 | 2.0E-16 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 243 | 10.974183 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 1.45E-46 |
| RefSeq | XP_025813539.1 | nuclear speckle RNA-binding protein A-like [Panicum hallii] | 4.99E-177 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 2.26E-49 | |
| TrEMBL | A0A3L6PF58 | Nuclear speckle RNA-binding protein A OS=Panicum miliaceum OX=4540 GN=C2845_PM10G00130 PE=4 SV=1 | 5.6E-176 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology