Basic Information
Locus ID:
CH06.1398
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 13577209 | 13583283 | + | CH06.1398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 113,246.92 Da | 49.61 | 65.03 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 725 | - | - |
| Coils | Coil | Coil | 360 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49430.2 | - | 3.03E-22 |
| RefSeq | XP_052134005.1 | uncharacterized protein LOC127752639 [Oryza glaberrima] | 1.49E-94 |
| M4ISH1 | Probable CoA ligase CCL6 OS=Humulus lupulus OX=3486 GN=CCL6 PE=2 SV=1 | 1.95E-22 | |
| TrEMBL | A0A0P0YAP0 | Os12g0495587 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0495587 PE=4 SV=1 | 6.55E-144 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |