Basic Information
Locus ID:
CH06.1252
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NAC domain transcription factor superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 11491145 | 11494948 | + | CH06.1252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 46,692.42 Da | 46.84 | 64.48 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 59 | 196 | 5.5E-22 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 42 | 215 | 4.18E-39 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 67 | 219 | 5.4E-30 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 58 | 215 | 32.253689 | IPR003441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 1.97E-140 |
| RefSeq | XP_004965197.1 | SUPPRESSOR OF GAMMA RESPONSE 1 [Setaria italica] | 1.86E-286 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 1.89E-139 | |
| TrEMBL | A0A368QV69 | NAC domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_4G118700v2 PE=4 SV=1 | 4.21E-285 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology