Basic Information
Locus ID:
CH06.1232
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 11302670 | 11307601 | + | CH06.1232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 42,329.98 Da | 57.57 | 82.92 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.04424E-29 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.7E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 360 | 395 | 8.8E-10 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 199 | 2.2E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 277 | 332 | 1.6E-19 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 208 | 1.32E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 1.36E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 273 | 338 | 3.01E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 345 | 402 | 2.92E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 352 | 399 | 6.1E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.7E-26 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 266 | 333 | 6.8E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 154 | 204 | 5.2E-21 | - |
| SMART | SM00165 | uba_6 | 161 | 201 | 2.6E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 360 | 397 | 2.2E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.7E-19 | IPR000626 |
| SMART | SM00727 | CBM | 273 | 318 | 4.0E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 403 | 3.7E-112 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.239443 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 357 | 398 | 14.595147 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 159 | 202 | 12.787865 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 371 | 385 | 3.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 386 | 401 | 3.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 354 | 370 | 3.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 303 | 325 | 3.1E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 1.8E-133 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 3.33E-214 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 3.68E-132 | |
| TrEMBL | A0A2S3HL08 | Ubiquitin receptor RAD23 OS=Panicum hallii OX=206008 GN=PAHAL_4G281300 PE=3 SV=1 | 7.53E-213 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology